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sequence alignment

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Bibliographies

29

1 Extensive identification and analysis of conserved small ORFs in animals

2 Gene discovery and annotation using LCM-454 transcriptome sequencing

3 Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

4 Comparative genomics provides evidence for an ancient genome duplication event in fish

5 Database resources of the National Center for Biotechnology Information

6 Regulated expression of three C/EBP isoforms during adipose conversion of 3T3-L1 cells

7 CDD: a database of conserved domain alignments with links to domain three-dimensional structure

8 Comparing de novo assemblers for 454 transcriptome data

9 Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

10 Peptides from conserved regions of paramyxovirus fusion (F) proteins are potent inhibitors of viral fusion

11 De Novo Design of Four-Helix Bundle Metalloproteins: One Scaffold, Diverse Reactivities

12 Use of tall fescue EST-SSR markers in phylogenetic analysis of cool-season forage grasses

13 A glutamine-rich hydrophobic patch in transcription factor Sp1 contacts the dTAFII110 component of the Drosophila TFIID complex and mediates transcriptional activation

14 Comparative genomics-based identification and analysis of cis-regulatory elements

15 Assignment of the membrane attachment, DNA binding, and transcriptional activation domains of sterol regulatory element-binding protein-1 (SREBP-1)

16 Functional diversity and mutational analysis of Agrobacterium 6B oncoproteins

17 Complex protein interactions within the human polyadenylation machinery identify a novel component

18 Epidemiological analysis of non-M-typeable group A Streptococcus isolates from a Thai population in northern Thailand

19 Formation of regulator/target gene relationships during evolution

20 The diploid genome sequence of an Asian individual

21 Identification and characterization of a novel botulinum neurotoxin

22 Multiple Sequence Alignment Using Chemical Reaction Optimization Algorithm

23 RNAconTest: Comparing tools for non-coding RNA multiple sequence alignment based on structural consistency.

24 HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing

25 DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.

26 The Sequence Alignment/Map format and SAMtools

27 PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

28 PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

29 PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments