Meeting the recent biological standards established by the Ballast Water Management Convention requires the application of ballast water treatment systems; ultraviolet irradiation is a frequently used option. However, organisms can repair the damage caused by ultraviolet irradiation primarily with photo-repair mechanisms that are dependent on the availability of light. The objective of this study is to quantify the impact of dark storage following ultraviolet irradiation on the viability of the microalgae Tetraselmis suecica. Results showed that one day of dark storage after ultraviolet irradiation enhanced the inactivation rate by 50% with respect to the absence of dark storage and increased up to the 84% with five days of dark storage. These results are consistent with photorepair, mostly in the first two days, prevented in the dark. The dose required to inactivate a determined ratio of organisms was correlated with the length of the dark post-treatment according to an inverse proportional function. This correlation may help to optimize the operation of ultraviolet ballast water treatment systems. Further, the results show that growth assays can detect organisms that are capable of repair after treatment with UV.