Pers. is a highly-prized mushroom for its edible and medical values. In this study, we determined the complete mitochondrial genome of combining both PacBio and Illumina sequencing technologies. The complete mitochondrial genome is 280,763 bp in length with a GC content of 39.88%. We identified a total of 14 core conserved protein-coding genes, 127 non-conserved open reading frames (ncORFs) and 30 tRNA genes in the mitogenome. However, no large or small rRNA subunits (rnl or rns) were identified in this mitogenome. In addition, we detected two mitochondrial RNase P (rnpB) genes and one ribosomal protein genes (rps3). Phylogenetic analysis was performed among and 18 other representative fungi from Ascomycota, Basidiomycota and Mucoromycota. Our results showed that was most closely related to . The availability of the mitochondrial genome will form the basis of genetic breeding program and enhance our understanding of the evolution of this species.