Environmental pollutant emissions have become increasingly serious, and the resulting human health problems have become the focus of social attention. In this study, 30 provinces in China were selected as the object of study, SO, NO (nitrogen oxide), and PM2.5 were taken as undesirable outputs, and a meta-frontier dynamic data envelopment analysis model was adopted to avoid the disadvantages of static analysis. In this paper, energy efficiency, environmental pollution efficiency, and human health efficiency were incorporated into a unified analysis framework by constructing a two-stage model of the production and health stages. The study shows that the total efficiency score of nine provinces and cities, including Beijing, is 1. However, the score of two-stage efficiency in most provinces, such as Anhui, is less than 1, and the score of production efficiency is higher than that of health efficiency. In the second stage, the average efficiency of health expenditure and medical staff input is low, so it is necessary to make targeted improvement. In this regard, it is necessary for the government to increase health expenditure to improve the overall level of health efficiency.