The purpose of this study is to replace the manual process (selecting the landmarks on mesh and anchor points on the video) by Intensity-based Automatic Registration method to reach registration accuracy and low processing time. The proposed system consists of an Enhanced Intensity-based Automatic Registration (EIbAR) using Modified Zero Normalized Cross Correlation (MZNCC) algorithm. The proposed system was implemented on videos of breast cancer tumours. Results showed that the proposed algorithm - as compared to a reference - improved registration accuracy by an average of 2mm. In addition, the proposed algorithm - as compared to a reference - reduced the number of pixel matching, thereby reducing processing time on the video by an average of 22 ms/frame. The proposed system can, thus, provide an acceptable accuracy and processing time during scene augmentation of videos, which provides a seamless use of augmented-reality for surgeons in visualizing cancer tumours.