F Paramagnetic Relaxation-Based NMR for Quaternary Structural Restraints of Ion Channels.

F Paramagnetic Relaxation-Based NMR for Quaternary Structural Restraints of Ion Channels.

Bondarenko, Vasyl;Wells, Marta M;Chen, Qiang;Singewald, Kevin C;Saxena, Sunil;Xu, Yan;Tang, Pei;
ACS chemical biology 2019
312
bondarenko2019facs

Abstract

Quaternary distance restraints are essential to define the three-dimensional structures of protein assemblies. These distances often fall within a range of 10-18 Å, which challenges the high and low measurement limits of conventional nuclear magnetic resonance (NMR) and double electron-electron resonance electron spin resonance spectroscopies. Here, we report the use of F paramagnetic relaxation enhancement (PRE) NMR in combination with F/paramagnetic labeling to equivalent sites in different subunits of a protein complex in micelles to determine intersubunit distances. The feasibility of this strategy was evaluated on a pentameric ligand-gated ion channel, for which we found excellent agreement of the F PRE NMR results with previous structural information. The study suggests that F PRE NMR is a viable tool in extracting distance restraints to define quaternary structures.

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51450
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10.1021/acschembio.9b00692
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