An outdoor macrocosm experiment using Fe-based and organic amendments over 2 years was set up to evaluate the effectiveness of aided-phytostabilisation. For that, a soil contaminated with As- and Cu-rich waste material (∼13000 mg As kg and ∼500 mg Cu kg) was treated with combinations of iron sulphate (Fe) with lime, paper mill sludge (PS), holm-oak biochar (BC), olive mill waste compost (OMWC) or green waste compost (GWC). Rye (Secale cereale L.) was grown in the treated and non-treated soils 16 months after addition of the amendments. Arsenic and Cu dynamics in soil were assessed throughout the experiment and soil quality parameters (soil nutrients, organic matter and soil biology) were measured almost two years after addition of the amendments. All treatments resulted in a reduction of soluble and extractable Cu during the experiment and, despite the increase in soil pH (from 5 to 68) and DOC (from 10 up to 50 mg DOC L) provoked by the amendments, As was not significantly mobilised in the treated soils. Treatments combining Fe sulphate with the organic materials, especially biochar and both composts, resulted in an increase in soil available nutrients and enhanced rye growth. In this semi-field scale experiment, the combination of Fe sulphate with holm-oak biochar showed the most promising results in terms of soil fertility (nutrient availability), plant As and Cu uptake and soil C sequestration. Further research should focus on monitoring long-term effects of the soil amendments on crops, following repeated applications.