The aim of this study is to establish the effect of heavy rainfall and the chosen pavement layers on the drainage design, material selection and rutting resistance of the flexible pavement. The test in present study was started with wheel track passing without load and without rain falling on the pavement for a period of time, and it was noticed that no distress appeared on the surface of the pavement. Then, the load is gradually added by using wheel track load of 106 psi for five tests without rain falling and five other tests with gradually increasing rain fall duration and intensity. Deterioration and distresses appeared on the pavement when increasing the wheel track load to (150 psi) under high intensity rain and long term duration of rain fall. By increasing the number of days, which is 103 days of study, when the pavement is saturated, the extra amount of the water will runoff. The clogging material which caused a decrease in the water seepage, increases the time of runoff ending. The clogging materials of fine particles that get deposited on the surface of the pavement resulted by passing the wheel track loading and wear & tear of the pavement surface, and other clogging materials such as salt in the water will penetrate to the pavement and seal the voids and decrease its water seepage. The water seepage decreases by increasing number of days, so the amount of the absorbed water decreases by 89% after 71 days of testing for high rain intensity (116 ml/min.).