In this paper, we present for the first time data on karyotype analysis of leeches of the genus Baicalobdella (Piscicolidae) parasitizing Lake Baikal endemic cottoid fishes. Both mitotic and meiotic chromosomes are described. Leech testisacs were processed by a “shaking-blotting” technique, and chromosomal preparations were stained with water-based fuchsine. Diploid and haploid chromosome sets demonstrated 2n=34 and n=17, respectively, with maximal chromosome length of 1.5-3.0 μm. Comparative karyotype analysis of two ecological forms of Baicalobdella leeches revealed differences in chromosome numbers and its morphology. Previously studied Baicalobdella torquata (Grube, 1871) parasitizing Baikal amphipods had smaller diploid and haploid sets (2n=32, n=16). In addition to numerical superiority, differing patterns of chromosome size gradation and presence of satellite elements were found in the karyotype of piscine Baicalobdella leeches. This confirms the systematic position of the Baikal cottoid leech parasite as a separate species, validating the original name Baicalobdella cottidarum sensu Dogiel, 1957.