A new species of Clariger Jordan & Snyder, 1901 was collected from northern Taiwan. The genus was previously known only from Japanese waters. This discovery is the first formal and southernmost record of these marine gobies from the waters of subtropical Taiwan. The new species, Clariger taiwanensis sp. n., is distinguished from its congeners by a unique combination of features: (1) fin rays: dorsal-fin rays III, I/8; anal-fin rays modally I/8; and pectoral-fin rays modally 19 (2+16+1); (2) longitudinal dermal ridge on head with 6 barbels; and (3) specific coloration pattern: head and trunk dark brown with scattered pale spots and blotches; cheek, ventral portion of head sometimes pale with deep brown spots; pectoral-fin base with a dark brown band; and caudal fin mostly dark brown proximally and with alternating and irregular dark brown and pale bands distally. A diagnostic key to all nominal species from Japan and Taiwan is provided.