One of the major challenges in the removal of organic pollutants is to design a material with high efficiency and high flux that can remove both cationic and anionic dyes, oil-in-water (O/W) emulsion and heavy metal ions. Herein, we constructed novel chemically stabilized MgAl-layered-double-hydroxide/sepiolite (MgAl-LDH/Sep) composite membranes via 3D hierarchical architecture construction methods. These membranes were analyzed by scanning electron microscopy (SEM), atomic force microscopy (AFM) and X-ray diffraction (XRD), etc. Benefiting from the presence of hydrophilic functional groups on the surface of the film, the membranes show an enhanced water flux (~1200 L·m h), while keeping a high dyes rejection (above 99.8% for anionic and cationic dyes). Moreover, the CA membrane coupled with MgAl-LDH/Sep exhibits a multifunctional characteristic for the efficient removal of mesitylene (99.2%), petroleum ether (99.03%), decane (99.07%), kerosene (99.4%) and heavy metal ion in water due to the layer-by-layer sieving. This hierarchical architecture is proved to have excellent environmental and chemical stability. Therefore, the membrane has potential in the treatment of sewage wastewater.