This article examines the processes of international research cooperation in the Baltic Sea region. It focuses on research works published in the leading periodicals in 1993—2012. The empirical material is collected from the world’s largest abstract and citation database, SciVerse Scopus, which makes it possible to evaluate macroindicators at the national and global levels as well as the contribution of scholars to the global progress. The article also offers an assessment of the efficiency of research activities in the Baltic Sea region countries. It is based on a number of scientometric indicators that reflect the performance of universities in terms of research journal publications and the development of research cooperation in the field of Baltic studies. The authors consider the dynamics of research contribution and academic cooperation in the Baltic Sea countries in four leading fields — i. e. agricultural and biological sciences, Earth sciences, ecology and social sciences presented in the SciVerse Scopus scientometric database. The article provides a map of research cooperation in the Baltic Sea region.