Near-infrared (NIR) spectroscopy and chemometric methods were applied to internal quality control of a Chinese green tea, Longjing, with Protected Geographical Indication (PGI). A total of 2745 authentic Longjing tea samples of three different grades were analyzed by NIR spectroscopy. To remove the influence of abnormal samples, The Stahel-Donoho estimate (SDE) of outlyingness was used for outlier analysis. Partial least squares discriminant analysis (PLSDA) was then used to classify the grades of tea based on NIR spectra. Different data preprocessing methods, including smoothing, taking second-order derivative (D2) spectra, and standard normal variate (SNV) transformation, were performed to reduce unwanted spectral variations in samples of the same grade before classification models were developed. The results demonstrate that smoothing, taking D2 spectra, and SNV can improve the performance of PLSDA models. With SNV spectra, the model sensitivity was 1.000, 0.955, and 0.924, and the model specificity was 0.979, 0.952, and 0.996 for samples of three grades, respectively. FT-NIR spectrometry and chemometrics can provide a robust and effective tool for rapid internal quality control of Longjing green tea.