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software*

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Bibliographies

13

1 PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

2 SNP discovery via 454 transcriptome sequencing

3 EMBOSS: the European Molecular Biology Open Software Suite

4 QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

5 WEGO: a web tool for plotting GO annotations

6 CAP3: A DNA sequence assembly program

7 Aggressive assembly of pyrosequencing reads with mates

8 Clustal W and Clustal X version 2.0

9 Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

10 Wikis, blogs and podcasts: a new generation of Web-based tools for virtual collaborative clinical practice and education

11 Easy SAS calculations for risk or prevalence ratios and differences

12 Web GIS in practice IV: publishing your health maps and connecting to remote WMS sources using the Open Source UMN MapServer and DM Solutions MapLab

13 The REDCap consortium: Building an international community of software platform partners