QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species
Abstract
QualitySNP is an efficient tool for SNP detection, storage and retrieval in diploid as well as polyploid species. It is available for running on Linux or UNIX systems. The program, test data, and user manual are available at http://www.bioinformatics.nl/tools/snpweb/ and as Additional files.
Keywords
databases
National Center for Biotechnology Information
NCBI
NLM
MEDLINE
genetic
pubmed abstract
nih
national institutes of health
national library of medicine
research support
non-u.s. gov't
Evaluation Study
Base Sequence
Molecular Sequence Data
Polymorphism
expressed sequence tags*
software*
pmid:17029635
pmc1618865
doi:10.1186/1471-2105-7-438
jifeng tang
ben vosman
jack a m leunissen
chromosome mapping / methods*
dna mutational analysis / methods*
dna transposable elements / genetics*
diploidy
gene deletion*
single nucleotide / genetics*
polyploidy
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115413
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