RepeatsDB in 2025: expanding annotations of structured tandem repeats proteins on AlphaFoldDB.

RepeatsDB in 2025: expanding annotations of structured tandem repeats proteins on AlphaFoldDB.

Clementel, Damiano; Arrías, Paula Nazarena; Mozaffari, Soroush; Osmanli, Zarifa; Castro, Ximena Aixa; Ferrari, Carlo; Kajava, Andrey V; Tosatto, Silvio C E; Monzon, Alexander Miguel
Nucleic Acids Research 2025 Vol. 53 pp. D575-D581
34
clementel2025repeatsdb

Abstract

RepeatsDB (URL: https://repeatsdb.org) stands as a key resource for the classification and annotation of Structured Tandem Repeat Proteins (STRPs), incorporating data from both the Protein Data Bank (PDB) and AlphaFoldDB. This latest release features substantial advancements, including annotations for over 34 000 unique protein sequences from >2000 organisms, representing a fifteenfold increase in coverage. Leveraging state-of-the-art structural alignment tools, RepeatsDB now offers faster and more precise detection of STRPs across both experimental and predicted structures. Key improvements also include a redesigned user interface and enhanced web server, providing an intuitive browsing experience with improved data searchability and accessibility. A new statistics page allows users to explore database metrics based on repeat classifications, while API enhancements support scalability to manage the growing volume of data. These advancements not only refine the understanding of STRPs but also streamline annotation processes, further strengthening RepeatsDB's role in advancing our understanding of STRP functions.

Citation

ID: 281796
Ref Key: clementel2025repeatsdb
Use this key to autocite in SciMatic or Thesis Manager

References

Blockchain Verification

Account:
NFT Contract Address:
0x95644003c57E6F55A65596E3D9Eac6813e3566dA
Article ID:
281796
Unique Identifier:
10.1093/nar/gkae965
Network:
Scimatic Chain (ID: 481)
Loading...
Blockchain Readiness Checklist
Authors
Abstract
Journal Name
Year
Title
5/5
Creates 1,000,000 NFT tokens for this article
Token Features:
  • ERC-1155 Standard NFT
  • 1 Million Supply per Article
  • Transferable via MetaMask
  • Permanent Blockchain Record
Blockchain QR Code
Scan with Saymatik Web3.0 Wallet

Saymatik Web3.0 Wallet