Hydrological pulses are the main factor regulating the structure of biological communities in floodplains. Reservoirs above this ecosystem change the environment's dynamics and the community's biodiversity. This study evaluated the structure and stability of the rotifer community in response to changes in hydrological pulses after the Porto Primavera impoundment in the Upper Paraná River floodplain. The community was studied in a river and in a floodplain lake downstream of the dam over a four-year period before and after the impoundment. A decrease in species richness and abundance was observed soon after the impoundment, followed by an increase in these attributes and in specific diversity when the hydrometric level of the Paraná River rose and, consequently, increased the connectivity between the floodplain environments. Conochilus coenobasis, Filinia longiseta, Keratella cochlearis, Lecane proiecta and Polyarthra dolichoptera persisted throughout the study and contributed to community stability (the maintenance of rank in species abundance over time), which was high in the floodplain lake, mainly after the impoundment. Reductions in the frequency, intensity and amplitude of potamophase pulses after the impoundment led to the decrease in species richness and the increases in abundance, community stability, and species diversity, which determine community resilience.