peptidebuilder: a simple python library to generate model peptides

peptidebuilder: a simple python library to generate model peptides

;Matthew Z. Tien;Dariya K. Sydykova;Austin G. Meyer;Claus O. Wilke
pediatrics 2013 Vol. 1 pp. e80-
183
tien2013peerjpeptidebuilder:

Abstract

We present a simple Python library to construct models of polypeptides from scratch. The intended use case is the generation of peptide models with pre-specified backbone angles. For example, using our library, one can generate a model of a set of amino acids in a specific conformation using just a few lines of python code. We do not provide any tools for energy minimization or rotamer packing, since powerful tools are available for these purposes. Instead, we provide a simple Python interface that enables one to add residues to a peptide chain in any desired conformation. Bond angles and bond lengths can be manipulated if so desired, and reasonable values are used by default.

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ID: 181880
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