This study describes an intelligent control algorithm for the solar tracking system (STS) providing maximum performance from the photovoltaic panel according to different sun positions. The solar tracking system is designed as dual axis to increase the efficiency of photovoltaic panels. DC motors are preferred in order to minimize cost and to control the azimuth and zenith angles in the solar tracking system. Fuzzy logic algorithms are used to adjust the speed of these motors to track the sun’s position with a high degree of accuracy. After designing a fuzzy logic controller in order to control the motors, membership functions of controller and control rules are simultaneously found by genetic algorithms which is an optimization algorithm based on natural selection and genetic mechanics. As a result in the study, the power performance analysis is compared between a photovoltaic panel positioned on the designed solar tracking system and a photovoltaic panel positioned on the static system. According to comparison results, the photovoltaic panel positioned on the solar tracking system is observed that it shows higher performance at varying rates of depending on the seasons.