In this paper, a fuzzy decision making methodology is proposed to find a socially optimal scenario for allocating effluent of wastewater treatment plants and urban and suburban runoffs to agricultural regions and recharging aquifers. The presented methodology named modified fuzzy social choice (MFSC) considers multi-stakeholder multi-criteria problems under uncertainties inherent in a decision making process utilizing a fuzzy ranking method and the fuzzy social choice (FSC) theory. A set of water and wastewater allocation scenarios are proposed for water quantity and quality management of the study area, while six main stakeholders with conflicting utilities and different negotiation powers are involved. The proposed methodology is applied to Tehran metropolitan area, the capital city of Iran with the population of about 8 million people, to examine its applicability and effectiveness. The results shows that using fuzzy multi-stakeholder multi-criteria decision making method considering equal and different negotiation powers can lead to different outcomes. Based on the results, the MFSC method, which considers a number of decision makers having different negotiation powers, degrees of importance of decision making criteria, and some important uncertainties, performs more promising in real water resources management problems.