The re-emergence of vanadium (V) as a toxic metal has been highlighted recently due to its long-standing environmental and health hazard. This work targeted the world largest reservoir-Three Gorges Reservoir (TGR) to explore the spatial variation of V in the flooding soils from 2014 to 2018; meanwhile, the typical riparian zones with different altitudes and land-uses at the middle reach of the TGR were selected to decipher the key drivers on the V distribution. The results showed that the concentrations of soil V in the mainstream markedly exceeded local background, but they did not vary significantly with time except a marked increase at the upper-middle reaches. Spatially, the concentrations of soil V increased towards the dam, and the increase trend became increasingly significant with time. At the typical riparian zone, the concentrations of soil V decreased strikingly with altitude despite the difference in the land-uses, and a marked change-point occurred at 160-165 m. The soil V dominated by residual fraction, followed by oxidizable and reducible fractions, and then the minimal acid-soluble fraction. The contamination and eco-risk of V in the soils were low with similar spatiotemporal variation to its concentrations. Entrained-sediment flow and particle size rather than pH and organic matters led to the spatiotemporal variation in the distribution of soil V in the mainstream, and the driving effects tended to be more predominant with time. Altitude-regulated alteration of soil properties including particle sizes and iron/manganese (hydr)oxides with different flooding duration dominated the vertical distribution of V over the local land-uses at the riparian zone. Our results reveal the hotspots of V contamination in the riparian soils of the TGR and highlight unceasing focus on the variation in the distribution and dynamic migration of soil V due to its levels out of limits and changing soil conditions.